{"title":"Angstrom Innovation: Sequencing Whole Microbial genomes","description":"","products":[{"product_id":"bacterial-wgs","title":"Bacterial Whole Genome Sequencing (less than 7 Mb)","description":"\u003cp\u003eSee our demo order here: \u003ca href=\"https:\/\/seqresults.angstrominno.com\/orders\/AI-1179\" target=\"_blank\" title=\"https:\/\/seqresults.angstrominno.com\/orders\/AI-1179\" rel=\"noopener\"\u003ehttps:\/\/seqresults.angstrominno.com\/orders\/AI-1179\u003c\/a\u003e\u003c\/p\u003e\n\u003cp\u003e\u003cstrong data-end=\"411\" data-start=\"349\"\u003eSee your bacterial whole genome sequence (WGS) with automated annotations!\u003c\/strong\u003e\u003c\/p\u003e\n\u003cp\u003e\u003cbr data-end=\"414\" data-start=\"411\"\u003e✅ No reference sequence is required to build the consensus.\u003cbr data-end=\"476\" data-start=\"473\"\u003e✅ If you provide a reference, we’ll align your results and highlight any mutations.\u003c\/p\u003e\n\u003ch3 data-end=\"893\" data-start=\"865\"\u003e\u003c\/h3\u003e\n\u003ch3 data-end=\"893\" data-start=\"865\"\u003eWGS samples will be processed on Tuesdays and Thursdays only.\u003c\/h3\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003ch3 data-end=\"893\" data-start=\"865\"\u003e🚚 Sample Pickup for Bay Area customers (M-F):\u003c\/h3\u003e\n\u003cp\u003eWe offer free Dropbox pickup on Monday to Friday. Have your orders submitted by 3:00 PM on a pickup day. Print out your confirmation email with QR code and place in the dropbox. Our courier will come around 4:00 PM for pickup. Please let us know if you need later time.\u003c\/p\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003ch3\u003e\u003cstrong data-end=\"1176\" data-start=\"1141\"\u003e📦 Customers mailing in samples from outside the Bay Area:\u003c\/strong\u003e\u003c\/h3\u003e\n\u003cp\u003eShip your samples to us via any major carrier\u003cspan\u003e \u003c\/span\u003e\u003cstrong\u003e(UPS preferred).\u003c\/strong\u003e\u003c\/p\u003e\n\u003cp\u003eYou’ll receive a confirmation once your shipment is received.\u003c\/p\u003e\n\u003cp\u003e\u003cbr\u003e\u003c\/p\u003e\n\u003ch3 data-end=\"600\" data-start=\"575\"\u003e⏱️ Turnaround Time (TAT)\u003c\/h3\u003e\n\u003cp\u003e\u003cstrong data-end=\"621\" data-start=\"603\"\u003eData delivery:\u003c\/strong\u003e\u003cspan\u003e About 1-3 days after samples have been received.\u003c\/span\u003e\u003c\/p\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003ch3\u003e\u003cstrong\u003e📄 Data Files Returned\u003c\/strong\u003e\u003c\/h3\u003e\n\u003cp\u003eAbout 200 Megabases (Mb) of NGS data (ONT Flow Cell, R10.4.1) will be generated for each bacterial sample.\u003cbr\u003e\u003c\/p\u003e\n\u003col\u003e\n\u003cli data-start=\"95\" data-end=\"134\"\u003e.fasta file (de novo genome assembly)\u003c\/li\u003e\n\u003cli data-start=\"95\" data-end=\"134\"\u003eProperly formatted GenBank file with de novo assembly and annotations\u003c\/li\u003e\n\u003cli data-start=\"211\" data-end=\"281\"\u003e.gff3 file (annotations generated via Bakta using the full database)\u003c\/li\u003e\n\u003cli data-start=\"284\" data-end=\"320\"\u003eAssembly report with Bandage plots\u003c\/li\u003e\n\u003cli data-start=\"323\" data-end=\"383\"\u003eCheckM QC report (assesses completeness and contamination)\u003c\/li\u003e\n\u003cli data-start=\"386\" data-end=\"444\"\u003eBreseq analysis report (if reference genome is provided)*\u003c\/li\u003e\n\u003cli data-start=\"447\" data-end=\"486\"\u003eRaw sequencing data (.fastq.gz files)\u003c\/li\u003e\n\u003cli data-start=\"489\" data-end=\"566\"\u003eInteractive IGV genome browser experience (if reference genome is provided)\u003c\/li\u003e\n\u003cli data-start=\"569\" data-end=\"638\"\u003eAutomatic determination of the closest species and reference genome\u003c\/li\u003e\n\u003c\/ol\u003e\n\u003cp\u003e\u003cmeta charset=\"utf-8\"\u003e*\u003ca href=\"https:\/\/github.com\/barricklab\" rel=\"noopener\" target=\"_blank\"\u003eBreseq\u003c\/a\u003e, from the Barrick Lab (UT Austin), is usually for short reads; however, for our service, long ONT reads are truncated (≈200 bp) to fit its mapping and junction analysis. It generates clear, highly interpretable reports for mutation discovery. Your samples are still sequenced with ONT!\u003c\/p\u003e\n\u003ch3\u003e\u003cstrong\u003e🧪 Sample Preparation Guidelines\u003c\/strong\u003e\u003c\/h3\u003e\n\u003cp\u003e\u003cbr\u003e\u003c\/p\u003e\n\u003cp\u003eDNA amount:\u003cspan\u003e \u003cstrong\u003e2\u003c\/strong\u003e\u003c\/span\u003e\u003cstrong data-end=\"1485\" data-start=\"1476\"\u003e0 µL\u003c\/strong\u003e\u003cspan\u003e \u003c\/span\u003eat\u003cspan\u003e \u003c\/span\u003e\u003cstrong data-end=\"1503\" data-start=\"1489\"\u003e\u0026gt; 50 ng\/µL\u003c\/strong\u003e.\u003c\/p\u003e\n\u003cp\u003eFor accuracy, please measure concentration using\u003cspan\u003e \u003c\/span\u003e\u003cstrong data-end=\"1569\" data-start=\"1560\"\u003eQubit\u003c\/strong\u003e\u003cspan\u003e \u003c\/span\u003e(Nanodrop tends to be less accurate).\u003c\/p\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003ch3 data-end=\"1644\" data-start=\"1614\"\u003e📂 Reference Files (optional)\u003c\/h3\u003e\n\u003cp\u003eIf you want an additional alignment view:\u003c\/p\u003e\n\u003cp\u003eAfter you place your order, you can go to\u003cspan\u003e \u003c\/span\u003e\u003ca rel=\"noopener\" href=\"https:\/\/seqresults.angstrominno.com\/\" target=\"_blank\"\u003eseqresults.angstrominno.com\u003c\/a\u003e\u003cspan\u003e \u003c\/span\u003eto upload your references in \u003cstrong data-end=\"1725\" data-start=\"1707\"\u003eGenBank (.gb or .gbk), Fasta (.fa or .fasta), or Snapgene format (.dna)\u003c\/strong\u003e. Make sure you upload them to the corresponding Order ID for example: \u003c\/p\u003e\n\u003cp\u003e\u003cimg height=\"244\" width=\"328\" alt=\"\" src=\"https:\/\/cdn.shopify.com\/s\/files\/1\/0694\/8598\/5991\/files\/reference_upload.png?v=1753149125\"\u003e\u003c\/p\u003e\n\u003cp\u003eIf possible (not required), use the same file name for your references as the supplied sequencing sample name.\u003c\/p\u003e","brand":"Angstrom Innovation Sequencing","offers":[{"title":"I will provide at least 20 µL of 50 ng\/µL of purified gDNA ($75\/sample)","offer_id":45034958815431,"sku":"","price":75.0,"currency_code":"USD","in_stock":true},{"title":"Angstrom will do gDNA extraction \u0026 sequencing. I will provide 2 mL of pelleted saturated culture resuspended in 500 µL in DNA\/RNA shield ($90\/sample)","offer_id":45034958782663,"sku":"","price":90.0,"currency_code":"USD","in_stock":true}],"thumbnail_url":"\/\/cdn.shopify.com\/s\/files\/1\/0694\/8598\/5991\/files\/bacterial_gDNA.png?v=1752577004"},{"product_id":"yeast-wgs","title":"Yeast Whole Genome Sequencing (less than 16 Mb)","description":"\u003ch2 data-start=\"237\" data-end=\"347\"\u003e\n\u003cstrong data-start=\"237\" data-end=\"261\"\u003e🧬 Starting August 2025\u003c\/strong\u003e\u003cbr data-start=\"261\" data-end=\"264\"\u003e\n\u003c\/h2\u003e\n\u003cp\u003eOpen to all customers!\u003c\/p\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003cp\u003e\u003cstrong data-start=\"349\" data-end=\"411\"\u003eSee your yeast whole genome sequence (WGS) with automated annotations!\u003c\/strong\u003e\u003cbr data-start=\"411\" data-end=\"414\"\u003e✅ No reference sequence is required to build the consensus.\u003cbr data-start=\"473\" data-end=\"476\"\u003e✅ If you provide a reference, we’ll align your results and highlight any unwanted mutations.\u003c\/p\u003e\n\u003cp\u003e\u003cmeta charset=\"utf-8\"\u003eOur pipeline is optimized for haploid sequences, but we also handle diploid and polyploid strains. Let’s discuss your goals so we can tailor the process to your needs! Email \u003ca href=\"mailto:info@angstrominno.com\"\u003einfo@angstrominno.com\u003c\/a\u003e to start a discussion.\u003c\/p\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003ch3 data-start=\"865\" data-end=\"893\"\u003e🚚 Sample Pickup for Bay Area customers:\u003c\/h3\u003e\n\u003cp\u003eWe offer\u003cspan\u003e \u003c\/span\u003e\u003cstrong data-start=\"931\" data-end=\"954\"\u003efree Dropbox pickup\u003c\/strong\u003e\u003cspan\u003e every weekday.\u003c\/span\u003e\u003c\/p\u003e\n\u003cp\u003eHave your orders submitted by \u003cstrong\u003e3\u003c\/strong\u003e\u003cstrong data-end=\"1033\" data-start=\"1014\"\u003e:00 PM\u003c\/strong\u003e on a pickup day. Print out your confirmation email with QR code and place in the dropbox. Our courier will come around \u003cstrong\u003e4:00 PM\u003c\/strong\u003e\u003cstrong\u003e for pickup\u003c\/strong\u003e. Please let us know if you need later time.\u003c\/p\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003ch3\u003e\u003cstrong data-start=\"1141\" data-end=\"1176\"\u003e📦 Customers mailing in samples from outside the Bay Area:\u003c\/strong\u003e\u003c\/h3\u003e\n\u003cp\u003eShip your samples to us via any major carrier\u003cspan\u003e \u003c\/span\u003e\u003cstrong\u003e(UPS preferred).\u003c\/strong\u003e\u003c\/p\u003e\n\u003cp\u003eYou’ll receive a confirmation once your shipment is received.\u003c\/p\u003e\n\u003cp\u003eAny samples received\u003cstrong data-start=\"1309\" data-end=\"1336\"\u003e Tuesday or Thursday by 4:00 PM Pacific\u003c\/strong\u003e\u003cspan\u003e \u003c\/span\u003ewill be processed starting that day!\u003c\/p\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003ch3 data-start=\"575\" data-end=\"600\"\u003e⏱️ Turnaround Time (TAT)\u003c\/h3\u003e\n\u003cp\u003e\u003cstrong data-start=\"603\" data-end=\"621\"\u003eData delivery:\u003c\/strong\u003e\u003cspan\u003e About 2-3 days after samples have been received. We process WGS orders on \u003cmeta charset=\"utf-8\"\u003e\n\u003cstrong data-start=\"1309\" data-end=\"1336\"\u003eTuesdays and Thursdays.\u003c\/strong\u003e\u003c\/span\u003e\u003c\/p\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003ch3\u003e\u003cstrong\u003e📄 Data Files Returned\u003c\/strong\u003e\u003c\/h3\u003e\n\u003cp\u003eAbout 600 Megabases (Mb) of NGS data (ONT Flow Cell, R10.4.1) will be generated for each yeast sample.\u003c\/p\u003e\n\u003cul\u003e\n\u003cli\u003eInteractive IGV plot (if reference is provided)\u003c\/li\u003e\n\u003cli\u003eBreseq Analysis Report (if reference is provided)\u003c\/li\u003e\n\u003cli\u003eGenbank file\u003c\/li\u003e\n\u003cli\u003eFASTA file\u003c\/li\u003e\n\u003cli\u003eGFF file (with annotations provided by MAKER)\u003cbr\u003e\n\u003c\/li\u003e\n\u003cli\u003eRaw data (FASTQ file)\u003c\/li\u003e\n\u003c\/ul\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003ch3\u003e\u003cstrong\u003e🧪 Sample Preparation Guidelines\u003c\/strong\u003e\u003c\/h3\u003e\n\u003cp\u003e\u003cbr\u003e\u003c\/p\u003e\n\u003cp\u003eDNA amount:\u003cspan\u003e \u003cstrong\u003e2\u003c\/strong\u003e\u003c\/span\u003e\u003cstrong data-start=\"1476\" data-end=\"1485\"\u003e0 µL\u003c\/strong\u003e\u003cspan\u003e \u003c\/span\u003eat\u003cspan\u003e \u003c\/span\u003e\u003cstrong data-start=\"1489\" data-end=\"1503\"\u003e\u0026gt; 50 ng\/µL\u003c\/strong\u003e.\u003c\/p\u003e\n\u003cp\u003eFor accuracy, please measure concentration using\u003cspan\u003e \u003c\/span\u003e\u003cstrong data-start=\"1560\" data-end=\"1569\"\u003eQubit\u003c\/strong\u003e\u003cspan\u003e \u003c\/span\u003e(Nanodrop tends to be less accurate).\u003c\/p\u003e\n\u003cp\u003e \u003c\/p\u003e\n\u003ch3 data-start=\"1614\" data-end=\"1644\"\u003e📂 Reference Files (optional)\u003c\/h3\u003e\n\u003cp\u003eIf you want an alignment view:\u003c\/p\u003e\n\u003cp\u003eAfter you place your order, you can go to\u003cspan\u003e \u003c\/span\u003e\u003ca href=\"https:\/\/seqresults.angstrominno.com\/\" rel=\"noopener\" target=\"_blank\"\u003eseqresults.angstrominno.com\u003c\/a\u003e\u003cspan\u003e \u003c\/span\u003eto upload your references in \u003cstrong data-start=\"1707\" data-end=\"1725\"\u003eGenBank (.gb or .gbk), Fasta (.fa or .fasta), or Snapgene format (.dna)\u003c\/strong\u003e. Make sure you upload them to the corresponding Order ID for example: \u003c\/p\u003e\n\u003cp\u003e\u003cimg src=\"https:\/\/cdn.shopify.com\/s\/files\/1\/0694\/8598\/5991\/files\/reference_upload.png?v=1753149125\" alt=\"\" width=\"328\" height=\"244\"\u003e\u003c\/p\u003e\n\u003cp\u003eIf possible (not required), use the same file name for your references as the supplied sequencing sample name.\u003c\/p\u003e\n\u003cp\u003e\u003cbr\u003e\u003c\/p\u003e","brand":"Angstrom Innovation","offers":[{"title":"I will provide at least 20 μL of 50 ng\/μL of purified gDNA ($100\/sample)","offer_id":45034956226759,"sku":"","price":100.0,"currency_code":"USD","in_stock":true},{"title":"Angstrom will do gDNA extraction \u0026 sequencing. I will provide 5 mL of pelleted saturated culture in 500 μL DNA\/RNA shield. ($115\/sample)","offer_id":45034956193991,"sku":"","price":115.0,"currency_code":"USD","in_stock":true}],"thumbnail_url":"\/\/cdn.shopify.com\/s\/files\/1\/0694\/8598\/5991\/files\/yeast_gDNA.png?v=1752577156"}],"url":"https:\/\/sequencing.angstrominno.com\/collections\/microbial-genomes.oembed?page=2","provider":"Angstrom Innovation","version":"1.0","type":"link"}